Journal: BMC Plant Biology

Article Title: Genome-wide expression profiling of aquaporin genes confer responses to abiotic and biotic stresses in Brassica rapa

doi: 10.1186/s12870-017-0979-5

Figure Lengend Snippet: Subgenome position, conserved amino acid residues (NPA motif, Ar/R filter, Froger's position), the prediction of transmembrane and MIP domains and subcellular localization of B. rapa Aquaporins

Article Snippet: Expression patterns of the 59 BrAQP genes were determined using our previously published microarray data set, wherein two contrasting B. rapa inbred lines cold-tolerance Chiifu and cold susceptible Kenshin, were treated with different temperatures (22 °C, 4 °C, 0 °C, −2 °C and −4 °C) [ ].

Techniques:

Journal: BMC Plant Biology

Article Title: Genome-wide expression profiling of aquaporin genes confer responses to abiotic and biotic stresses in Brassica rapa

doi: 10.1186/s12870-017-0979-5

Figure Lengend Snippet: Phylogenetic analysis of aquaporin proteins identified in B. rapa, Arabidopsis and tomato. Based on relatedness to characterized proteins, aquaporins were classified as plasma membrane intrinsic proteins (PIPs) in the blue tree , tonoplast intrinsic proteins (TIPs) in the pink tree, nodulin 26-like intrinsic proteins (NIPs) in the red tree, small basic intrinsic proteins (SIPs) in the green tree and X intrinsic proteins (XIP) in the deep green tree . At, Sl, Br denote Arabidopsis, tomato and B. rapa and red , blue and black letters denote Arabidopsis, tomato and B. rapa aquaporin proteins, respectively

Article Snippet: Expression patterns of the 59 BrAQP genes were determined using our previously published microarray data set, wherein two contrasting B. rapa inbred lines cold-tolerance Chiifu and cold susceptible Kenshin, were treated with different temperatures (22 °C, 4 °C, 0 °C, −2 °C and −4 °C) [ ].

Techniques: Clinical Proteomics, Membrane

Journal: BMC Plant Biology

Article Title: Genome-wide expression profiling of aquaporin genes confer responses to abiotic and biotic stresses in Brassica rapa

doi: 10.1186/s12870-017-0979-5

Figure Lengend Snippet: Microsynteny analysis of AQP genes among B. rapa, B. oleracea and A. thaliana . The chromosomes from the three species are indicated in different colors; red, green and yellow colors represent B. rapa, A. thaliana and B. oleracea chromosomes, respectively. Black lines denote duplicated BrAQP genes on 10 B. rapa chromosomes

Article Snippet: Expression patterns of the 59 BrAQP genes were determined using our previously published microarray data set, wherein two contrasting B. rapa inbred lines cold-tolerance Chiifu and cold susceptible Kenshin, were treated with different temperatures (22 °C, 4 °C, 0 °C, −2 °C and −4 °C) [ ].

Techniques:

Journal: BMC Plant Biology

Article Title: Genome-wide expression profiling of aquaporin genes confer responses to abiotic and biotic stresses in Brassica rapa

doi: 10.1186/s12870-017-0979-5

Figure Lengend Snippet: Differential expression profiles of BrAQP genes in different temperatures. C and K indicate Chiifu and Kenshin, respectively, which were treated under five temperatures: control (C1&K1), 4 °C (C2 & K2), 0 °C (C3 & K3), −2 °C (C4 & K4), and - 4 °C (C5 & K5). Expression clusters are shown in the left (Cl1–Cl7) and gene names are at the right. Color legend at right represents differential expression in microarray data

Article Snippet: Expression patterns of the 59 BrAQP genes were determined using our previously published microarray data set, wherein two contrasting B. rapa inbred lines cold-tolerance Chiifu and cold susceptible Kenshin, were treated with different temperatures (22 °C, 4 °C, 0 °C, −2 °C and −4 °C) [ ].

Techniques: Quantitative Proteomics, Control, Expressing, Microarray